| structure name | ANTPHD WITH 15BP DNA DUPLEX R-MONOTHIOATED AT CYTIDINE-8 (Homeotic protein antennapedia) |
| reference | Zandarashvili et al. Chembiochem 17 1636 2016 |
| source | Drosophila melanogaster |
| experiment | X-ray (resolution=2.09, R-factor=0.219) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| redundant complexes |  1ahd_P
4xic_D
4xid_D
5jlx_D
9ant_B
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRIQN |
Estimated binding specificities ?
| contact |  |
A | 11 67 0 0 67 0 C | 67 11 0 0 11 0 G | 9 9 0 0 9 96 T | 9 9 96 96 9 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: ANTENNAPEDIA | ||
| TAATG | PubMed | 5jlw_D(1.20e-07), 4xic_A(3.59e-04), 4xid_D(7.10e-07), ... (total=5) |
| CCAAT | PubMed | 5jlw_D(2.85e-03), 4xic_A(2.64e-03), 4xid_D(6.05e-03), ... (total=5) |
| TTAATT | PubMed | 5jlw_D(1.12e-03), 4xic_A(1.13e-03), 4xid_D(3.38e-03), ... (total=5) |
Dendrogram of similar interfaces ?
matrix formatRT------------------IAQCNAYA--RT L +1nk2_P +---------------2 RT------------------NT--NAITRG-- +----6 +5zjt_B ! ! RA----------------RCVTCTNAQTRC-- L +-----8 +----------------1au7_A ! ! RT------------------NT--NAIARG-- L ! +---------------------1b72_B ! RT------------------IAKGNA------ L +-10 +---------------6m3d_C ! ! +-----5 ------------------RTVAITNAMCRG-- L ! ! ! +---------------1yrn_A ! ! ! RT------------------VAQTNA------ L ! ! ! +-5hod_A ! +-----9 +----------3 RT------------------ITQCNAACRG-- L ! ! ! ! +6a8r_A +-11 ! +---4 +-1 ----RT--------------NCSTNARG---- L ! ! ! ! ! +1mnm_C ! ! +----7 ! ------------------RCVACTNAQA---- L ! ! ! +------------7xrc_C +-12 ! ! --NGRGTGLG----LC---------------- ! ! ! +----------------6vjw_A ! ! ! RA------------------YAQTNAAARG-- L -13 ! +-----------------------------6wig_A ! ! --------------------ITKGNARGRA-- L ! +-----------------------------1zq3_P ! ----------STRGQTQAST------------ L +-----------------------------7t8k_B |
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updated Fri Sep 13 19:57:25 2024