9bdu_AB : 3D-footprint complex

structure name	NF-KAPPAB RELA HOMO-DIMER BOUND TO AT-CENTRIC KAPPAB DNA
reference	Biswas et al. Proc.Natl.Acad.Sci.USA 121 e2405555121 2024
source	Mus musculus
experiment	X-ray (resolution=2.03, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9bdu_A interface=15,17,18,20,21,23,169,200, pyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdKvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtd > 9bdu_B interface=16,18,19,21,22,170, mpyveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdt
interface signature	RRYCERRK/RRYCER

Estimated binding specificities ?

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# IC=11.820 IC/col=0.985 n_of_columns=12

specificity:

A |   0   0   0   0  96  69  24  17   0   0   0  61
C |   0   0   0   0   0  11  24  10   0  96  96  10
G |   0  96  96  96   0   8  24   8   0   0   0   8
T |  96   0   0   0   0   8  24  61  96   0   0  17

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updated Mon Dec 16 17:13:34 2024