9bdv_AB : 3D-footprint complex

structure name	NF-KAPPAB RELA HOMO-DIMER BOUND TO TA-CENTRIC KAPPAB DNA
reference	Tsodikov et al. Proc.Natl.Acad.Sci.USA 121 e2405555121 2024
source	Mus musculus
experiment	X-ray (resolution=1.90, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9bdv_A interface=15,17,18,20,21,23,169, pyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtdd > 9bdv_B interface=16,18,19,21,22,170,201, mpyveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdKvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd
interface signature	RRYCERR/RRYCERK

Estimated binding specificities ?

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# IC=14.118 IC/col=1.086 n_of_columns=13

specificity:

A |   0   0  96  72  78  12   0   0   0   0  96   6   0
C |   0   0   0   6   6   6   0  96  96  96   0  12   0
G |  96  96   0   6   6   6   0   0   0   0   0  18   0
T |   0   0   0  12   6  72  96   0   0   0   0  60  96

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updated Thu Jan 8 17:13:07 2026