9bdv_AB : 3D-footprint complex

structure name	NF-KAPPAB RELA HOMO-DIMER BOUND TO TA-CENTRIC KAPPAB DNA
reference	Tsodikov et al. Proc.Natl.Acad.Sci.USA 121 e2405555121 2024
source	Mus musculus
experiment	X-ray (resolution=1.90, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9bdv_A interface=15,17,18,20,21,23,169, pyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtdd > 9bdv_B interface=16,18,19,21,22,170,201, mpyveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdKvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd
interface signature	RRYCERR/RRYCERK

Estimated binding specificities ?

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# IC=13.214 IC/col=1.101 n_of_columns=12

specificity:

A |   0   0   0   0   0  96  61  17   8   0   0   0
C |  96   0   0   0   0   0  10  10   8   0  96  96
G |   0   0  96  96  96   0   8   8   8   0   0   0
T |   0  96   0   0   0   0  17  61  72  96   0   0

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updated Mon Dec 16 17:13:53 2024