9bdw_AB : 3D-footprint complex

structure name	NF-KAPPAB RELA HOMO-DIMER BOUND TO GC-CENTRIC KAPPAB DNA
reference	Tsodikov et al. Proc.Natl.Acad.Sci.USA 121 e2405555121 2024
source	Mus musculus
experiment	X-ray (resolution=1.87, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9bdw_A interface=16,18,19,21,22,24,170, mpyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtd > 9bdw_B interface=16,18,19,21,22,170,201, mpyveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdKvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd
interface signature	RRYCERR/RRYCERK

Estimated binding specificities ?

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# IC=10.912 IC/col=0.992 n_of_columns=11

specificity:

A |   0   0  96  60  24  12   0   0   0   0  96
C |   0   0   0  12  24  12   0  96  96  84   0
G |  96  96   0  12  24  12   0   0   0   0   0
T |   0   0   0  12  24  60  96   0   0  12   0

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updated Mon Dec 16 17:14:17 2024