9bdx_AB : 3D-footprint complex

structure name	NF-KAPPAB RELA HOMO-DIMER BOUND TO CG-CENTRIC KAPPAB DNA
reference	Tsodikov et al. Proc.Natl.Acad.Sci.USA 121 e2405555121 2024
source	Mus musculus
experiment	X-ray (resolution=3.60, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9bdx_A interface=15,17,18,20,21,23,169, pyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtdd > 9bdx_B interface=16,18,19,22,170, mpyveiieqpkqrgmRfRYkcEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd
interface signature	RRYCERR/RRYER

Estimated binding specificities ?

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# IC=10.077 IC/col=0.916 n_of_columns=11

specificity:

A |   0   0  78  78  24   6   6   0   0   0  78
C |   0   0   6   6  24   6   6  96  96  96   6
G |  96  96   6   6  24   6   6   0   0   0   6
T |   0   0   6   6  24  78  78   0   0   0   6

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updated Sat Aug 2 00:18:59 2025