9c4c_EFGH : 3D-footprint complex

structure name	THE STRUCTURE OF TWO MNTR DIMERS BOUND TO THE NATIVE MNEP PROMOTER SEQUENCE
experiment	NMR
structural superfamily	Iron-dependent repressor protein, dimerization domain;"Winged helix" DNA-binding domain;
reference complex	9c4c_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9c4c_E interface=33,35,38,39,55, tpsmedyieqiymlieekgyarvsdiaealavHpSsvTKmvqkldkdeyliyekYrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkkte > 9c4c_F interface=33,34,35,36,38,55, tpsmedyieqiymlieekgyarvsdiaealavHPSSvTkmvqkldkdeyliyekYrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkkt > 9c4c_G interface=33,34,35,38,39,55, tpsmedyieqiymlieekgyarvsdiaealavHPSsvTKmvqkldkdeyliyekYrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkkt > 9c4c_H interface=34,35,38,39, tpsmedyieqiymlieekgyarvsdiaealavhPSsvTKmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkkte
interface signature	HSTKY/HPSSTY/HPSTKY/PSTK

Estimated binding specificities ?

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# IC=18.519 IC/col=0.597 n_of_columns=31

specificity:

A |   0   0  24  24  24  24  24  24   0   0  96  71   2  24  92  72   1  96  96  24  24  24  24  24  24  90  19  72  96  24  94
C |  96  96  24  24  24  24  24  24  96   0   0   1   1  24   3  16   1   0   0  24  24  24  24  24  24   4   9   1   0  24   1
G |   0   0  24  24  24  24  24  24   0   0   0  17   1  24   0   3   1   0   0  24  24  24  24  24  24   1  55   5   0  24   0
T |   0   0  24  24  24  24  24  24   0  96   0   7  92  24   1   5  93   0   0  24  24  24  24  24  24   1  13  18   0  24   1

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updated Mon Dec 16 17:15:05 2024