9c4c_G : 3D-footprint complex

structure name	THE STRUCTURE OF TWO MNTR DIMERS BOUND TO THE NATIVE MNEP PROMOTER SEQUENCE
experiment	NMR
structural superfamily	Iron-dependent repressor protein, dimerization domain;"Winged helix" DNA-binding domain;
sequence family	Iron dependent repressor, Nterminal D; Iron dependent repressor, metal bindin;
multimeric complexes	9c4c_EFGH 9c4d_CDEFGHIJ
redundant complexes	9c4d_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9c4c_G interface=33,34,35,38,39,55, tpsmedyieqiymlieekgyarvsdiaealavHPSsvTKmvqkldkdeyliyekYrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkkt
interface signature	HPSTKY

Estimated binding specificities ?

readout + contact

# IC=3.866 IC/col=0.773 n_of_columns=5

specificity:

A |   0   0  72  61   8
C |  96   0   8  17  17
G |   0   0   8   1  17
T |   0  96   8  17  54

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --TT------KATTQTTGLTRTKA--FTYT   L       +-----------------------------2p7c_B    
                                         +-1 
  ------------------YG----------       +-2 +-----------------------------3eyi_B    
                                       ! ! 
  RT--LANTHGTTETYTRG------------   L --3 +-----------------------------1f4k_B    
                                       ! 
  ------SG--PTPGTT--------HG----   L   +-----------------------------7d98_Q

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updated Wed Dec 18 20:09:56 2024