9c4d_CDEFGHIJ : 3D-footprint complex

Interface of input file ?

structure name	THE STRUCTURE OF 4 MNTR HOMODIMERS BOUND TO THE PROMOTER SEQUENCE OF MNEP
experiment	NMR
structural superfamily	Iron-dependent repressor protein, dimerization domain;"Winged helix" DNA-binding domain;
reference complex	9c4c_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 9c4d_C interface=33,34, tpsmedyieqiymlieekgyarvsdiaealavHPssvtkmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq > 9c4d_D interface=33,35,36,39, tpsmedyieqiymlieekgyarvsdiaealavHpSSvtKmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq > 9c4d_E interface=33,34,35,38,39, tpsmedyieqiymlieekgyarvsdiaealavHPSsvTKmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq > 9c4d_F interface=33,34,35,38, tpsmedyieqiymlieekgyarvsdiaealavHPSsvTkmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq > 9c4d_G interface=33,35,55, tpsmedyieqiymlieekgyarvsdiaealavHpSsvtkmvqkldkdeyliyekYrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq > 9c4d_H interface=33,34,35,38,39, tpsmedyieqiymlieekgyarvsdiaealavHPSsvTKmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq > 9c4d_I interface=33,34,35,38,39, tpsmedyieqiymlieekgyarvsdiaealavHPSsvTKmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq > 9c4d_J interface=33,34,35,36, tpsmedyieqiymlieekgyarvsdiaealavHPSSvtkmvqkldkdeyliyekyrglvltskgkkigkrlvyrhelleqflriigvdeekiyndvegiehhlswnsidrigdlvqyfeeddarkkdlksiqkktehhnq
interface signature	HP/HSSK/HPSTK/HPST/HSY/HPSTK/HPSTK/HPSS

Estimated binding specificities ?

readout + contact

# IC=19.768 IC/col=0.329 n_of_columns=60

specificity:

A |   6   0  67  24  24  24  24  24  24  24   0   0  24  24  24  24  24  24  24  24   0   0  75  24  24  24  24  11  24  95   0  24  24  24  24  24  24  24  24  96  24  69  24  24  24  24  24  24   0   0  24  24  24  24  24  24  24   0   0   0
C |  82  96  15  24  24  24  24  24  24  24   2   0  24  24  24  24  24  24  24  24   0   0   7  24  24  24  24  11  24   0   0  24  24  24  24  24  24  24  24   0  24   9  24  24  24  24  24  24   1   0  24  24  24  24  24  24  24  96  96  96
G |   1   0   9  24  24  24  24  24  24  24   0   0  24  24  24  24  24  24  24  24   0   0   5  24  24  24  24  13  24   1  96  24  24  24  24  24  24  24  24   0  24   9  24  24  24  24  24  24   1  96  24  24  24  24  24  24  24   0   0   0
T |   7   0   5  24  24  24  24  24  24  24  94  96  24  24  24  24  24  24  24  24  96  96   9  24  24  24  24  61  24   0   0  24  24  24  24  24  24  24  24   0  24   9  24  24  24  24  24  24  94   0  24  24  24  24  24  24  24   0   0   0

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updated Mon Dec 16 17:15:50 2024