1a1f_A : 3D-footprint complex

structure name	DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) (THREE-FINGER ZIF268 PEPTIDE)
reference	Elrod-Erickson et al.
source	Mus musculus
experiment	X-ray (resolution=2.10, R-factor=0.225)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1a1f_A interface=16,18,19,22,44,45,46,47,50,72,73,74,75,78, rpyacpvescdrrfsDsSNltRhirihtgqkpfqcricmrnfsRSDHltThirthtgekpfacdicgrkfaRSDErkRhtkihl
interface signature	DSNRRSDHTRSDER

Estimated binding specificities ?

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# IC=10.912 IC/col=1.091 n_of_columns=10

specificity:

A |   0   0   0   0   0   0   0  96  12  12
C |   0  84   0   0   0   0   0   0  60  60
G |  96   0  96   0  96  96  96   0  12  12
T |   0  12   0  96   0   0   0   0  12  12

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updated Mon Dec 16 17:37:02 2024