structure name | EGR-1 WITH DOUBLY METHYLATED DNA (Early growth response protein 1) |
reference | Zandarashvili et al. |
source | Homo sapiens |
experiment | X-ray (resolution=1.41, R-factor=0.174) |
structural superfamily | beta-beta-alpha zinc fingers; |
sequence family | Zinc finger, C2H2 type; |
multimeric complexes | 1p47_AB |
redundant complexes | 1a1f_A 1a1g_A 1a1h_A 1a1i_A 1a1j_A 1a1k_A 1a1l_A 1aay_A 1jk1_A 1jk2_A 1p47_A 1zaa_C 4r2a_A 4r2c_A 4r2d_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RDERRSDHTRDER |
Estimated binding specificities ?
readout + contact |
A | 39 24 24 0 0 0 96 24 24 0 C | 19 24 24 96 96 96 0 24 24 76 G | 19 24 24 0 0 0 0 24 24 0 T | 19 24 24 0 0 0 0 24 24 20scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: ZIF268 | ||
GCGTGGGCG | PubMed | 4x9j_A(3.18e-11), 1p47_AB(2.76e-12), 4r2a_A(2.53e-10), ... (total=17) |
GCGTGGGGCG | PubMed | 4x9j_A(2.13e-04), 1p47_AB(1.52e-05), 4r2a_A(5.33e-07), ... (total=17) |
AGCGTGGGCGT | PubMed | 4x9j_A(1.92e-09), 1p47_AB(1.92e-12), 4r2a_A(1.15e-08), ... (total=17) |
Dendrogram of similar interfaces ?
matrix formatRGDC--SCHG----DC--SANA----WCSCVG--RG-- L +-------------------5v3g_A ! ------SA--MT--VT----NARG----ETTG------ +-5 +--6e94_A ! ! +------------2 --EC--SGKGRG--DG--YCKGRG--QA--TC------ L ! +---4 +--5k5h_A +-6 ! --------------QA----TCRG--RGYCRT------ L ! ! +---------------7txc_E +-7 ! --CT--STQTLTITST--STHTRG--RG--EA--RA-- L ! ! +---------------------5v3j_F +-8 ! --NT--STNAVT--QTSTSGKGRG-------------- L ! ! +-----------------------6u9q_A ! ! QT--AG--KGRG--RG--DCKG---------------- L ! +------------------------7n5w_A --9 --KG--WTKA--------HCHGRG--TAACNA--KGRG L ! +1tf6_A ! +-----------1 NGKT--WTKG--------HTHGRGTGTTACNA--KGRG L +--------------3 +1tf3_A ! ------------RGST--YGYC----QCTGSTRGYT-- +-----------4is1_C |
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updated Fri Sep 13 18:58:39 2024