structure name | QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) (QGSR ZINC FINGER PEPTIDE) |
reference | Elrod-Erickson et al. |
source | Mus musculus |
experiment | X-ray (resolution=1.60, R-factor=0.235) |
structural superfamily | C2H2 and C2HC zinc fingers; |
sequence family | Zinc finger, C2H2 type; |
multimeric complexes | 1p47_AB |
redundant complexes | 1zaa 1a1g 1a1k 1jk1 1a1l 1a1i 1p47 1a1j 1a1f 1aay 1jk2 |
reference complex | 4x9j_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | QSRRSDHTRDER |
Estimated binding specificities ?
readout + contact |
A | 0 0 0 12 12 0 0 12 96 C | 0 96 0 12 0 0 0 60 0 G | 96 0 96 12 84 96 96 12 0 T | 0 0 0 60 0 0 0 12 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: ZIF268 | ||
GCGTGGGGCG | PubMed | 1a1h_A(9.86e-08), 1p47_AB(1.50e-05), 1zaa_C(6.09e-07), ... (total=13) |
GGGCGG | PubMed | 1a1h_A(1.03e-02), 1p47_AB(6.33e-07), 1zaa_C(8.73e-05), ... (total=10) |
TGGGCG | PubMed | 1a1h_A(3.96e-05), 1p47_AB(6.26e-07), 1zaa_C(3.61e-08), ... (total=12) |
Dendrogram of similar interfaces ?
matrix formatQATCNA----QAHTTT--QA--TTLAHGTCDTRG L +-1g2d_F +--------1 --TTSGRG--LT--ETYC----NTYGQG------ L ! +-4f6m_A --3 ----------DCATSC--RGRG----SGEG--RG L ! +---4gzn_C +------2 --------RGST--YGYC----QC--TGSTRGYT L +---4is1_C |
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updated Thu Sep 12 14:30:55 2024