1akh_AB : 3D-footprint complex

structure name	MAT A1/ALPHA2/DNA TERNARY COMPLEX
reference	Vershon et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1le8_A 1le8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1akh_A interface=39,40,43,44,47,48, ispqarafleevfrrkqslnskekeevakkcgitplqvRVwfINkrMRs > 1akh_B interface=5,8,51,54,55,58, tkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektitiapeladllsgepl
interface signature	RVINMR/RRNSNR

Estimated binding specificities ?

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# IC=12.638 IC/col=0.743 n_of_columns=17

specificity:

A |   6   0  96  24  90  24  96  24  24  24   6   0   6   0  84   0  96
C |   6   0   0  24   0  24   0  24  24  24  12   6  18   0   0  96   0
G |   6  96   0  24   6  24   0  24  24  24  12   0  12   0   0   0   0
T |  78   0   0  24   0  24   0  24  24  24  66  90  60  96  12   0   0

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updated Tue Jul 29 14:16:16 2025