1akh_AB : 3D-footprint complex

structure name	MAT A1/ALPHA2/DNA TERNARY COMPLEX
reference	Vershon et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1k61_B 1le8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1akh_A interface=39,40,43,44,47,48, ispqarafleevfrrkqslnskekeevakkcgitplqvRVwfINkrMRs > 1akh_B interface=5,8,51,54,55,58, tkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektitiapeladllsgepl
interface signature	RVINMR/RRNSNR

Estimated binding specificities ?

readout + contact

# IC=12.518 IC/col=0.736 n_of_columns=17

specificity:

A |   0   0  12  96  57  96  57  24  24  24   0  24   0  24   0   0  76
C |   0   0   0   0  15   0  12  24  24  24   0  24   6  24   0  96   8
G |   0  96   0   0  12   0  15  24  24  24   0  24   1  24   0   0   6
T |  96   0  84   0  12   0  12  24  24  24  96  24  89  24  96   0   6

scan!

home
updated Wed Jun 24 08:43:44 2026