1akh_AB : 3D-footprint complex

structure name	MAT A1/ALPHA2/DNA TERNARY COMPLEX
reference	Vershon et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1k61_B 1le8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1akh_A interface=39,40,43,44,47,48, ispqarafleevfrrkqslnskekeevakkcgitplqvRVwfINkrMRs > 1akh_B interface=5,8,51,54,55,58, tkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektitiapeladllsgepl
interface signature	RVINMR/RRNSNR

Estimated binding specificities ?

readout + contact

# IC=12.658 IC/col=0.745 n_of_columns=17

specificity:

A |   6   0  96  24  90  24  96  24  24  24  12   0   6   0  90   0  96
C |   6   0   0  24   0  24   0  24  24  24  12   6  18   0   0  96   0
G |   6  96   0  24   6  24   0  24  24  24  12   0  12   0   0   0   0
T |  78   0   0  24   0  24   0  24  24  24  60  90  60  96   6   0   0

scan!

home
updated Sun Jan 4 20:39:22 2026