1le8_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
reference	Mathias et al. Structure 10 961 2002
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	1akh_AB 1le8_AB 1yrn_AB
redundant complexes	1akh_A 1yrn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1le8_A interface=42,43,46,47,50,51, kssispqarafleqvfrrkqslnskekeevakkcgitplqvRVwfINkrMRsk
interface signature	RVINMR

Estimated binding specificities ?

contact

# IC=6.292 IC/col=0.787 n_of_columns=8

specificity:

A |   9   7  73   9  24   0   0  96
C |   7   7   7  73  24   0  96   0
G |   7   7   9   7  24   0   0   0
T |  73  75   7   7  24  96   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  QTVAQTNA----   L                            +8osb_E    
                               +--------------1 
  --VTKGNA--KA   L       +-----3              +2lkx_A    
                         !     ! 
  --NCICNARGRG   L   +---4     +--------------4xrm_B    
                     !   ! 
  --IAQCNAMG--   L   !   !                +---1b72_A    
                   --5   +----------------2 
  --IAQCNAYC--   L   !                    +---3rkq_B    
                     ! 
  --VTCCNAQA--   L   +------------------------8g87_X

home
updated Sun Aug 3 05:44:59 2025