1le8_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
reference	Mathias et al. Structure 10 961 2002
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	1akh_AB 1le8_AB 1yrn_AB
redundant complexes	1akh_A 1yrn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1le8_A interface=42,43,46,47,50,51, kssispqarafleqvfrrkqslnskekeevakkcgitplqvRVwfINkrMRsk
interface signature	RVINMR

Estimated binding specificities ?

contact

# IC=6.338 IC/col=0.792 n_of_columns=8

specificity:

A |   0   0  96  24   7   7  73  73
C |   0   0   0  24   7   7   9   7
G |   0  96   0  24  75   7   7   9
T |  96   0   0  24   7  75   7   7

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --IAQCNAMG--   L                         +--1b72_A    
                                  +--------2 
  QTVAQTNA----   L                !        !  +8osb_E    
                             +----3        +--1 
  --VTKGNA--KA   L           !    !           +2lkx_A    
                     +-------4    ! 
  --NCICNARGRG   L   !       !    +-----------4xrm_B    
                   --5       ! 
  --IAQCNAYC--   L   !       +----------------3rkq_B    
                     ! 
  --VTCCNAQA--   L   +------------------------8g87_X

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updated Fri Sep 13 15:47:33 2024