interface graph thumbnail
legend  pdf

structure nameSTRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE
(ENDONUCLEASE ECORV 3.1.21.4)
referencePerona et al.
sourceEscherichia coli
experimentX-ray (resolution=2.00, R-factor=0.183)
structural superfamilyRestriction endonuclease-like;
sequence familyRestriction endonuclease EcoRV;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNKTNSNTN

Estimated binding specificities ?

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# IC=3.142 IC/col=0.524 n_of_columns=6 specificity:   
A |  13  54  24  24   0   0
C |  13  13  24  24   0  96
G |  57  16  24  24   0   0
T |  13  13  24  24  96   0
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updated Mon Dec 16 17:41:54 2024