1bvo_A : 3D-footprint complex

Estimated binding specificities ?

structure name	DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA (TRANSCRIPTION FACTOR GAMBIF1)
reference	Barillas-Mury et al. 'Structure 7 841 1999
source	Anopheles gambiae
experiment	X-ray (resolution=2.70, R-factor=0.219)
structural superfamily	p53-like transcription factors;
sequence family	Rel homology domain RHD;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1bvo_A interface= pyveiteqphpkalrfryecegrsagsipgvnttaeqktfpsiqvhgyrgravvvvscvtkegpehkphphnlvgkegckkgvctveinsttmsytfnnlgiqcvkkkdveealrlrqeirvdpfrtgfghakepgsidlnavrlcfqvflegqqrgrftepltpvvsdiiydkk

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# IC=5.637 IC/col=1.127 n_of_columns=5

specificity:

A |   0   0   0   0  12
C |   0   0   0   0  12
G |   0  96  96  96  12
T |  96   0   0   0  60

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Dendrogram of similar interfaces ?

matrix format

  
  RCRCYC--ECHC--   L                                 +1svc_P    
                                      +--------------1 
  RGRGYTCTECHG--   L   +--------------2              +2o61_B    
                       !              ! 
  RGRGYTCCECHTKT   L --3              +--------------1nfk_A    
                       ! 
  RGRGYTCCECHG--   L   +-----------------------------1a3q_A

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updated Sat Jan 10 04:30:12 2026