| structure name | NFKB P50 HOMODIMER BOUND TO DNA (PROTEIN NUCLEAR FACTOR KAPPA-B NF-KB) |
| reference | Harrison et al. Nature 373 311 1995 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.60, R-factor=0.225) |
| structural superfamily | p53-like transcription factors;E set domains; |
| sequence family | Rel homology domain RHD; IPT/TIG domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRYEHKR |
Estimated binding specificities ?
| contact |  |
A | 13 24 24 0 0 0 16 C | 13 24 24 0 96 96 54 G | 54 24 24 0 0 0 13 T | 16 24 24 96 0 0 13scan! |
Dendrogram of similar interfaces ?
matrix formatRCRCYC--EC------HC--KT----RG L +1svc_P +-1 RGRGYTCCEC------HTKTKTPTKTRG L ! +1nfk_A +--6 RGRGYACCEC----SAHG--KG------ L ! ! +7cli_B ! ! +-3 RGRGYA--EC------HG--KG------ L ! +-5 +7w7l_B +-----7 ! RGRGYTCCEC------HG--KG------ L ! ! +1a3q_A ! ! RGRG----EC----------RGPTKT-- L ! ! +2ram_A +---------8 +----2 RGRGYTCTEC----------RT------ L ! ! +1gji_A ! ! RGRGYTCCEC----------KT------ L ! ! +2v2t_A -10 +----------4 RGRGYTCTEC--RT------RT--KA-- L ! +2o61_A ! RGRG----EG--RG-------------- L ! +-------------1bvo_A +------9 RG--YT--TTEC----RG---------- L +-------------1imh_C |
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updated Mon Dec 16 18:52:58 2024