| structure name | STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER (PROTEIN NUCLEAR FACTOR KAPPA-B NF-KB) |
| reference | Van Duyne et al. Nature 373 303 1995 |
| source | MUS MUSCULUS |
| experiment | X-ray (resolution=2.30, R-factor=0.230) |
| structural superfamily | p53-like transcription factors;E set domains; |
| sequence family | Rel homology domain RHD; IPT/TIG domain; |
| multimeric complexes | 1le5_AB 1le5_EF 1le9_AB 1le9_EF 1lei_AB 1nfk_AB 1vkx_AB 2i9t_AB 2o61_AB 3gut_ABD 3gut_CF 3gut_EGH 8tkl_AB 8tkm_AB |
| redundant complexes | 1lei_B
1svc_P
 2i9t_B
3gut_D
8tkl_A
8tkm_B
8tkn_B
1le5
1le9
1vkx
2o61
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRYCEKPKR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 15 56 C | 0 1 4 31 G | 96 95 74 4 T | 0 0 3 5scan! |
Dendrogram of similar interfaces ?
matrix formatRGRGYTCCEC----HTKT--KTPTKTRG---- L +1nfk_A +-3 RCRCYC--EC----HC----KT----RG---- L ! +1svc_P +-6 RGRGYA--EC----HG----KG---------- L ! ! +7w7l_B ! ! +-1 RGRGYACCEC----HG----KG---------- L +---7 +-5 +7cli_B ! ! ! RGRGYTCCEC----HG----KG---------- L ! ! +1a3q_A ! ! RGRGYTCTEC----------RT---------- L +-----------8 +----1gji_A ! ! RGRGYTCCEC----------KT---------- L ! ! +2v2t_A ! +-------4 RGRG----EC----------RGPTKT------ L +-----9 ! +2ram_A ! ! +-2 RGRGYTCTEC--RT------RT--KA------ L ! ! +2o61_A -10 ! RG--YTTT--EC--RG---------------- L ! +--------------------1imh_C ! ------------------RC--------KARC L +--------------------------1p7h_L |
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updated Fri Sep 13 15:53:18 2024