1d3u_AB : 3D-footprint complex

structure name	TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
reference	Littlefield et al.
source	PYROCOCCUS WOESEI
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	TATA-box binding protein-like;Cyclin-like;
reference complex	1ais_A 1ais_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1d3u_A interface=13,15,43,44,58,60,66,68,104,106,134,135,149,151,157,159, mvdmskvklrieNiVasvdlfaqldlekvldlcpnskynpeeFPgiichlddpkvalLiFssgklVvTgaksvqdieravaklaqklksigvkfkrapqidvqNmVfsgdigrefnldvvaltlpnceyepeqFPgviyrvkepksviLlFssgkiVcSgakseadaweavrkllreldky > 1d3u_B interface=179,181,182,184,185, mvsdaaernlafalseldritaqlklprhveeeaarlyreavrkglirgrsiesvmaacvyaacrllkvprtldeiadiarvdkkeigrsyrfiarnlnltpkklfvkptdyvnkfadelglsekvrrraieildeaykrgltsgkspaglvaaalyiasllegekrtqrevaevarvTeVTvRNrykelveklkikvpia
interface signature	NVFPLFVTNVFPLFVS/TVTRN

Estimated binding specificities ?

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# IC=14.884 IC/col=0.992 n_of_columns=15

specificity:

A |  96   0  11  75  96  60  24   5   0   0  96  96  76   0  96
C |   0   0  10  10   0  10  24   0   0   0   0   0  10   0   0
G |   0  96  10   5   0  11  24   6   0   0   0   0   5   0   0
T |   0   0  65   6   0  15  24  85  96  96   0   0   5  96   0

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updated Sun Jan 4 20:55:44 2026