1d3u_AB : 3D-footprint complex

structure name	TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
reference	Littlefield et al.
source	PYROCOCCUS WOESEI
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	TATA-box binding protein-like;Cyclin-like;
reference complex	1ais_A 1ais_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1d3u_A interface=13,15,43,44,58,60,66,68,104,106,134,135,149,151,157,159, mvdmskvklrieNiVasvdlfaqldlekvldlcpnskynpeeFPgiichlddpkvalLiFssgklVvTgaksvqdieravaklaqklksigvkfkrapqidvqNmVfsgdigrefnldvvaltlpnceyepeqFPgviyrvkepksviLlFssgkiVcSgakseadaweavrkllreldky > 1d3u_B interface=179,181,182,184,185, mvsdaaernlafalseldritaqlklprhveeeaarlyreavrkglirgrsiesvmaacvyaacrllkvprtldeiadiarvdkkeigrsyrfiarnlnltpkklfvkptdyvnkfadelglsekvrrraieildeaykrgltsgkspaglvaaalyiasllegekrtqrevaevarvTeVTvRNrykelveklkikvpia
interface signature	NVFPLFVTNVFPLFVS/TVTRN

Estimated binding specificities ?

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# IC=14.220 IC/col=0.948 n_of_columns=15

specificity:

A |   0  96   9   0   0  96  96  68  24  24   0   6  68   0   0
C |   0   0   6   0   0   0   0  13  24  24   0   6  13  96   0
G |   0   0   6   0   0   0   0   9  24  24   0   6   6   0   0
T |  96   0  75  96  96   0   0   6  24  24  96  78   9   0  96

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updated Mon Sep 9 12:02:59 2024