| structure name | TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI (PROTEIN TRANSCRIPTION INITIATION FACTOR IIB) |
| reference | Dedecker et al. Proc.Natl.Acad.Sci.USA 94 6042 1997 |
| source | PYROCOCCUS WOESEI |
| experiment | X-ray (resolution=2.10, R-factor=0.212) |
| structural superfamily | Cyclin-like; |
| sequence family | Transcription factor TFIIB repeat; |
| multimeric complexes | 1ais_AB 1d3u_AB |
| redundant complexes | 1d3u |
| links to other resources | NAKB  PDIdb DNAproDB |
No structural evidence for specific binding to DNA (<4 informative columns)
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: TATA | ||
| TATAAA | PubMed | 1ais_AB(1.71e-04), 1d3u_AB(2.29e-03) |
| TATAAAAG | PubMed | 1ais_AB(1.23e-05) |
| TATATATA | PubMed | 1d3u_AB(3.61e-03) |
| TATAAAA | PubMed | 1ais_AB(2.03e-06) |
| TATTTAAA | PubMed | 1ais_AB(6.14e-09), 1d3u_AB(3.96e-11) |
| TATAA | PubMed | 1ais_AB(9.96e-03) |
| TTTATA | PubMed | 1ais_AB(1.71e-04), 1d3u_AB(2.29e-03) |
| TGTAAA | PubMed | 1ais_AB(1.71e-04), 1d3u_AB(3.58e-04), 1d3u_B(3.57e-04) |
| CATAAA | PubMed | 1ais_AB(6.50e-03) |
| CATAAAA | PubMed | 1ais_AB(1.71e-04) |
| TATATAA | PubMed | 1ais_AB(5.33e-03), 1d3u_AB(9.51e-05) |
| TAAAAGC | PubMed | 1ais_AB(1.71e-04) |
| TATAAGAG | PubMed | 1ais_AB(1.28e-02) |
| AATAAAAG | PubMed | 1ais_AB(6.29e-04), 1d3u_B(9.79e-03) |
| ATTATTATT | PubMed | 1ais_AB(6.95e-03) |
| TAAAA | PubMed | 1ais_AB(1.69e-06), 1d3u_AB(1.25e-02) |
| TATTA | PubMed | 1ais_AB(9.96e-03), 1d3u_AB(1.25e-02) |
| TTAAGA | PubMed | 1ais_AB(1.71e-04) |
| TATTATTTA | PubMed | 1ais_AB(6.95e-03), 1d3u_AB(8.60e-04) |
| TATATA | PubMed | 1d3u_AB(2.27e-03) |
| TATAAACG | PubMed | 1ais_AB(3.18e-03) |
| TGTAA | PubMed | 1ais_AB(9.96e-03), 1d3u_AB(1.25e-02), 1d3u_B(1.35e-04) |
| TATTTAA | PubMed | 1ais_AB(2.18e-06), 1d3u_AB(4.25e-09) |
| TTATATA | PubMed | 1ais_AB(5.33e-03), 1d3u_AB(9.51e-05) |
| TAAAT | PubMed | 1ais_AB(1.82e-03), 1d3u_AB(3.01e-05) |
| CTTTT | PubMed | 1ais_AB(1.82e-03) |
| TAAATATA | PubMed | 1ais_AB(3.32e-03), 1d3u_AB(1.34e-04) |
| TAAAAGT | PubMed | 1ais_AB(1.71e-04), 1d3u_AB(1.18e-02) |
| TATAAAT | PubMed | 1ais_AB(1.08e-03), 1d3u_AB(9.63e-05) |
| CTTATTTAT | PubMed | 1ais_AB(6.95e-03), 1d3u_AB(8.60e-04) |
| TACAAAAG | PubMed | 1ais_AB(3.32e-03) |
| TATAGATA | PubMed | 1d3u_AB(3.61e-03) |
| ATATAA | PubMed | 1d3u_AB(2.27e-03) |
| CTATAAAAG | PubMed | 1ais_AB(4.24e-05) |
| TTATACATT | PubMed | 1d3u_AB(9.45e-03) |
| CATAAAAC | PubMed | 1ais_AB(6.29e-04) |
| TAAATT | PubMed | 1ais_AB(6.50e-03), 1d3u_AB(3.50e-04) |
| site | source | matches (E-value) |
Dendrogram of similar interfaces ?
matrix format------------EG-------------- L +-----------------------------6cnb_R +-1 ------------VCTC------------ +-2 +-----------------------------7nvu_M ! ! ------------VC--RG---------- +-3 +-----------------------------1c9b_M ! ! ACRC------------------------ L +-4 +-----------------------------4roc_A ! ! ------------------NT--NA--RG L +-5 +-----------------------------1b8i_B ! ! ------------------NCITNARGRG L --6 +-----------------------------6fqq_E ! ----STQGRTST---------------- L +-----------------------------7bcb_B |
home
updated Fri Sep 13 15:22:57 2024