1dsz_AB : 3D-footprint complex

structure name	STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1
reference	Khorasanizadeh et al. 'EMBO 19 1045 2000
source	HOMO SAPIENS
experiment	X-ray (resolution=1.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1dsz_A interface=20,23,27,28, pcfvcqdkssgyhygvsacEgcKgffRRsiqknmvytchrdknciinkvtrnrcqycrlqkcfevgmskesvrnd > 1dsz_B interface=26,29,33,34,82, gsftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeeRqr
interface signature	EKRR/EKKRR

Estimated binding specificities ?

readout + contact

# IC=11.449 IC/col=0.954 n_of_columns=12

specificity:

A |  16   0  88   0   0   0  24   7   0  66   0   0
C |   7   0   0  96  96  14  24   0   0   7  96  96
G |   7  96   7   0   0   7  24   7  96  16   0   0
T |  66   0   1   0   0  75  24  82   0   7   0   0

scan!

home
updated Fri Dec 13 08:56:22 2024