3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Mon Sep 9 12:08:01 2024

structure name	X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
reference	Hanson et al.
source	GALLUS GALLUS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Histone-fold;lambda repressor-like DNA-binding domains;p53-like transcription factors;Nucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
reference complex	1eqz_E 5gtc_H 5o9g_E 5o9g_F 5z3u_A 6a5l_d 6buz_H 6c0w_H 6ftx_B 6iro_A 6nqa_A 6pww_K 6r25_E 6r8y_H 6see_H 6t7a_H 6x0n_f 6x59_H 6y5d_H 6yov_C 7at8_D 7d1z_H 7e8d_H 7eg6_A 7egp_S 7k5x_H 7k60_H 7k63_H 7nkx_a 7nkx_f 7otq_E 7pet_H 7scy_H 7u0g_M 7unc_a 7und_e 7vdt_B 7xcr_F 7xzx_N 7xzz_N 7zs9_e 8a3y_a 8aag_A 8atf_Q 8bvw_e 8byq_e 8ceo_r 8cww_A 8g57_E 8h0v_h 8he5_a 8jh2_e 8jhf_A 8siy_G 8xgc_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1eqz_A interface= sgrgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkktdshka > 1eqz_B interface=12,14,16, vtktqkkgdkkRkKsRkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk > 1eqz_C interface=12,13,36,54, apatggvkkphRYrpgtvalreiryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 1eqz_D interface=32, gakrhrkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakktvtamdvvyalkrqgrtlygfgg > 1eqz_E interface=121, grgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkktdShkakak > 1eqz_F interface= tktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk > 1eqz_G interface=25,49,66, prkqlatkaarksapatggvkkphRyrpgtvalreirryqkstellirLpfqrlvreiaqdktdlRfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarirgera > 1eqz_H interface=25,38, kglgkggakrhrkvlrdniqgitkPairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg