6a5l_e : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	RNA POLYMERASE II ELONGATION COMPLEX STALLED AT SHL(-1) OF THE NUCLEOSOME, WITH FOREIGN DNA (HISTONE H3.3)
source	HOMO SAPIENS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6a5l_AB 6a5l_Eabcdef 6a5l_gh 6a5o_ABEabcdefgh 6a5p_ABEabcdefgh 6a5r_ABEabcdef 6a5t_ABEabcdef 6a5u_ABEbc 6a5u_adef 6a5u_gh 6inq_ABEbcdef 6inq_gh 6ir9_ABEWabcdef 6j4w_ABEWabcdefgh 6j4x_ABEWabcdef 6j4y_ABEWabcdef 6j4z_AB 6j4z_EWabcdef 6j4z_gh 6j50_BEbc 6j50_adef 6j50_gh 6j51_ABEWabcdef 6j51_gh 7wbw_Mg 7xse_ABEWabcdef 7xse_hu 7xsx_ABEWabcdejk 7xsx_hu 7xsz_ABEWabcdefgh 7xt7_ABEWabcdefjk 7xt7_hu 7xtd_ABEabcdejk 7xtd_fh 7xti_ABEWabhjk 7xti_ef 8he5_Eh 8jh2_gh
redundant complexes	6a5t_a 6j4w_e 6a5o 6a5p 6a5r 6a5u 6inq 6ir9 6j4x 6j4y 6j4z 6j50 6j51 7wbv 7wbw 7wbx 7xse 7xsx 7xsz 7xt7 7xtd 7xti 8h0v 8h0w 8he5 8jh2 8jh3 8jh4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6a5l_e interface=2, hRyrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera

  
  RG--------       +-----------------------------8jh2_e    
                   ! 
  --------RA     --5                          +--7xsx_a    
                   !      +-------------------2 
  --------RG       !      !                   +--8txv_G    
                   +------4 
  --RAAANA--              !      +---------------1jfi_B    
                          +------3 
  --------RG                     !               +7e9c_G    
                                 +---------------1 
  --------RT                                     +8u14_G

home
updated Fri Sep 13 21:16:37 2024