1le8_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2-3A HETERODIMER BOUND TO DNA COMPLEX
reference	Mathias et al. Structure 10 961 2002
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1le8_A 1le8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1le8_A interface=42,43,46,47,50,51, kssispqarafleqvfrrkqslnskekeevakkcgitplqvRVwfINkrMRsk > 1le8_B interface=3,4,47,50,51,54, rgHRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvAArrAkektitiapeladllsgepl
interface signature	RVINMR/HRNAAA

Estimated binding specificities ?

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# IC=10.921 IC/col=0.683 n_of_columns=16

specificity:

A |   3  24  96  24  24  67  24  24   3   3  75   3  96   0   0  85
C |   3  24   0  24  24  10  24  24   5   3   3  85   0   0  96   3
G |  85  24   0  24  24  13  24  24   3   3   5   5   0   0   0   5
T |   5  24   0  24  24   6  24  24  85  87  13   3   0  96   0   3

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updated Mon Sep 9 12:47:58 2024