1lei_AB : 3D-footprint complex

structure name	THE KB DNA SEQUENCE FROM THE HLV-LTR FUNCTIONS AS AN ALLOSTERIC REGULATOR OF HIV TRANSCRIPTION
reference	Chen-Park et al. J.Biol.Chem. 277 24701 2002
source	MUS MUSCULUS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1lei_A interface=17,18,20,21,169, ayveiieqpkqrgmrfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 1lei_B interface=16,18,22,26, gpylqileqpkqrgfRfRyvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydskapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RYCER/RREH

Estimated binding specificities ?

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# IC=4.978 IC/col=0.453 n_of_columns=11

specificity:

A |   6  11  24  96  15  24  24  24   7   0   9
C |   6   9  24   0  49  24  24  24  75  96  67
G |   6  67  24   0  15  24  24  24   7   0  11
T |  78   9  24   0  17  24  24  24   7   0   9

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updated Fri Dec 13 09:43:12 2024