1lei_AB : 3D-footprint complex

structure name	THE KB DNA SEQUENCE FROM THE HLV-LTR FUNCTIONS AS AN ALLOSTERIC REGULATOR OF HIV TRANSCRIPTION
reference	Chen-Park et al. J.Biol.Chem. 277 24701 2002
source	MUS MUSCULUS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	1nfk_A 9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1lei_A interface=17,18,20,21,169, ayveiieqpkqrgmrfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 1lei_B interface=16,18,22,26, gpylqileqpkqrgfRfRyvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydskapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RYCER/RREH

Estimated binding specificities ?

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# IC=8.881 IC/col=0.740 n_of_columns=12

specificity:

A |  13   0   0   0  24  24  24   6   0  84   0  75
C |   9   0   0   0  24  24  24   9   0   6  96   9
G |   6  96  90  96  24  24  24  68   0   6   0   6
T |  68   0   6   0  24  24  24  13  96   0   0   6

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updated Mon Sep 9 12:48:27 2024