1mnm_ABCD : 3D-footprint complex

structure name	YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
reference	Richmond et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	SRF-like;Homeodomain-like;
reference complex	1mnm_A 1mnm_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mnm_A interface=5,16,20,24, qkerRkieikfienkTrrhVtfsKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapdd > 1mnm_B interface=1,17,20,21, RrkieikfienktrrhVtfSKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapd > 1mnm_C interface=20,23,66,69,70,73, glvfnvvtqdminkstkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1mnm_D interface=19,23,66,70,73, glvfnvvtqdminkstkpYrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt
interface signature	RTVK/RVSK/RRNSNR/YRNNR

Estimated binding specificities ?

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# IC=22.020 IC/col=0.918 n_of_columns=24

specificity:

A |  86   0   0  64   0   4   4  88  24  24  24  24   0   0  84  88  96   0   4   0  82   0  94  81
C |   1   0   0   4  96  91   4   4  24  24  24  24   0   0   4   4   0   0   2   0   0  96   2   4
G |   9   0   0  19   0   0   4   2  24  24  24  24  96  96   4   2   0   0   6   0   0   0   0   4
T |   0  96  96   9   0   1  84   2  24  24  24  24   0   0   4   2   0  96  84  96  14   0   0   7

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updated Tue Jul 29 15:34:31 2025