1mnm_ABCD : 3D-footprint complex

structure name	YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
reference	Richmond et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.25, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mnm_A interface=5,16,20,24, qkerRkieikfienkTrrhVtfsKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapdd > 1mnm_B interface=1,17,20,21, RrkieikfienktrrhVtfSKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapd > 1mnm_C interface=20,23,66,69,70,73, glvfnvvtqdminkstkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1mnm_D interface=19,23,66,70,73, glvfnvvtqdminkstkpYrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt
interface signature	RTVK/RVSK/RRNSNR/YRNNR

Estimated binding specificities ?

readout + contact

# IC=21.651 IC/col=0.902 n_of_columns=24

specificity:

A |   6   0   0  22  96  80  89   0   0   4   0   0  24  24  24  24   6  77   0   0   4  96  96   0
C |   2   2   0   1   0   4   4   0   0   4  96  96  24  24  24  24   2   9   1   0  27   0   0  10
G |   4   0  96   0   0   4   0   0   0   4   0   0  24  24  24  24   4   4  93  96   6   0   0   0
T |  84  94   0  73   0   8   3  96  96  84   0   0  24  24  24  24  84   6   2   0  59   0   0  86

scan!

home
updated Fri Dec 13 09:58:55 2024