1mnm_ABCD : 3D-footprint complex

structure name	YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
reference	Richmond et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	SRF-like;Homeodomain-like;
reference complex	1mnm_A 1mnm_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mnm_A interface=5,16,20,24, qkerRkieikfienkTrrhVtfsKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapdd > 1mnm_B interface=1,17,20,21, RrkieikfienktrrhVtfSKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapd > 1mnm_C interface=20,23,66,69,70,73, glvfnvvtqdminkstkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1mnm_D interface=19,23,66,70,73, glvfnvvtqdminkstkpYrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt
interface signature	RTVK/RVSK/RRNSNR/YRNNR

Estimated binding specificities ?

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# IC=21.637 IC/col=0.902 n_of_columns=24

specificity:

A |  89   0   0  55   0   2   9  84  24  24  24  24   0   0  82  89  96   0   4   0  70   0  96  84
C |   0   0   0   9  96  93   6   4  24  24  24  24   0   0   4   5   0   0   4   0   0  96   0   4
G |   7   0   0  26   0   1   6   4  24  24  24  24  96  96   4   0   0   0   6   0   0   0   0   4
T |   0  96  96   6   0   0  75   4  24  24  24  24   0   0   6   2   0  96  82  96  26   0   0   4

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updated Mon Sep 9 13:03:46 2024