1mnm_ABCD : 3D-footprint complex

structure name	YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
reference	Richmond et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Homeodomain-like;SRF-like;
reference complex	1k61_B 1mnm_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mnm_A interface=5,16,20,24, qkerRkieikfienkTrrhVtfsKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapdd > 1mnm_B interface=1,17,20,21, RrkieikfienktrrhVtfSKrkhgimkkafelsvltgtqvlllvvsetglvytfstpkfepivtqqegrnliqaclnapd > 1mnm_C interface=20,23,66,69,70,73, glvfnvvtqdminkstkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1mnm_D interface=19,23,66,70,73, glvfnvvtqdminkstkpYrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt
interface signature	RTVK/RVSK/RRNSNR/YRNNR

Estimated binding specificities ?

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# IC=21.827 IC/col=0.909 n_of_columns=24

specificity:

A |   4   2   0  22  96  81  88   0   2   0   0   0  24  24  24  24   4  86   0   0   6  96  96   0
C |   7   6   0   0   0   2   6   0   4   2  96  96  24  24  24  24   2   4   1   0  24   0   0   0
G |   2   2  96   1   0   9   0   0   2   8   0   0  24  24  24  24   4   4  93  96   2   0   0   0
T |  83  86   0  73   0   4   2  96  88  86   0   0  24  24  24  24  86   2   2   0  64   0   0  96

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updated Wed Jun 24 10:13:43 2026