interface graph thumbnail
legend  pdf

structure nameVND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
(HOMEOBOX PROTEIN VND)
sourceDROSOPHILA MELANOGASTER
experimentNMR
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
redundant complexes1nk2
reference complex1nk2_P
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRIQNY

Estimated binding specificities ?

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# IC=6.152 IC/col=0.769 n_of_columns=8 specificity:   
A |   5  20   0  96  96  24   5   5
C |   5  10  96   0   0  24   5   5
G |  81  16   0   0   0  24  21  80
T |   5  50   0   0   0  24  65   6
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: VND/NK-2
CAAGTGPubMed1nk3_P(2.66e-05)
AAGTGPubMed1nk3_P(2.45e-03)

Dendrogram of similar interfaces ?

matrix format



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updated Sat Aug  2 01:18:30 2025