| structure name | VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES (HOMEOBOX PROTEIN VND) |
| source | DROSOPHILA MELANOGASTER |
| experiment | NMR |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| redundant complexes |  1nk3_P
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KRIQNYR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 13 57 96 C | 0 0 57 13 0 G | 96 0 13 13 0 T | 0 96 13 13 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: VND | ||
| CAAGTG | PubMed | 1nk3_P(2.17e-05) |
| AAGTG | PubMed | 1nk3_P(2.09e-03) |
Dendrogram of similar interfaces ?
matrix format------------RTQT--ITQANAVTKTKT L +------------2ld5_A ! ------RA----------ITQTNAMG---- L +------------6 +5zjt_E ! ! +-1 ----RCRT----------NT--NAITRG-- ! +-----------3 +5zjt_B ! ! --RC--RT----------ITQCNAACRG-- L +---8 +6a8r_A ! ! ------------------IA--NA------ ! ! +4qtr_D ! ! +----------------------2 ------RT----------NT--NA------ L ! ! ! +1b72_B +-9 +--7 ------------------NCITNARGRG-- L ! ! ! +------6fqq_E ! ! +---------------5 --------LTRTSGTGQTRG---------- L +-10 ! +------2xro_E ! ! ! --RT--RT--------KTIAQCNA----RT L ! ! +-----------------------------1ig7_A +-11 ! ------RT----------IAKGNA------ L ! ! +-----------------------------2hdd_A ! ! RTTTAT--------NTTCTA---------- L +-12 +-----------------------------5zux_A ! ! ------RA--------KGSAQA-------- L ! ! +---6j5b_C -13 +-------------------------4 ------RT--STVC--KGDCRG-------- L ! +---1w0t_A ! ------RT----------NT--NA--RG-- L +-----------------------------1b8i_B |
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updated Fri Sep 13 15:53:36 2024