1nk2_P : 3D-footprint complex

structure name	VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES (HOMEOBOX PROTEIN VND)
source	DROSOPHILA MELANOGASTER
experiment	NMR
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
redundant complexes	1nk3_P
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1nk2_P interface=11,13,55,58,59,62,66, asdglpnkkrKrRvlftkaqtyelerrfrqqrylsaperehlaslirltptqvkIwfQNhrYktkRaqnekgyeghp
interface signature	KRIQNYR

Estimated binding specificities ?

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# IC=4.475 IC/col=0.895 n_of_columns=5

specificity:

A |   0   0   0  54  13
C |   0   0   0  13  57
G |   0   0  96  13  13
T |  96  96   0  16  13

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: VND
CAAGTG	PubMed	1nk3_P(2.17e-05)
AAGTG	PubMed	1nk3_P(2.09e-03)

Dendrogram of similar interfaces ?

matrix format

  
  RARA--IAQTNA----   L                  +-5ego_B    
                         +--------------1 
  --RT--NT--NA----   L   !              +-1b72_B    
                       --3 
  RCRT--VTQTNA--RG   L   !            +---8ejp_B    
                         +------------2 
  ----RTNT--NAIARG   L                +---4cyc_B

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updated Sat Jan 10 04:51:03 2026