| structure name | CRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEX (CCAATenhancer binding protein alpha) |
| reference | Sebastian et al. J.Biol.Chem. 278 15178 2003 |
| source | Rattus norvegicus |
| experiment | X-ray (resolution=2.80, R-factor=0.221) |
| structural superfamily | Leucine zipper domain; |
| sequence family | Basic region leucine zipper; |
| multimeric complexes | 1nwq_AC |
| reference complex | 8k8c_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RNNAVR |
Estimated binding specificities ?
readout + contact |  |
A | 21 0 0 96 55 C | 44 0 96 0 21 G | 21 96 0 0 10 T | 10 0 0 0 10scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: EBPALPHA | ||
| TTGCGTCAT | PubMed | 1nwq_A(2.91e-03) |
Dendrogram of similar interfaces ?
matrix format------RA----NANCATAT--STRG L +-2e42_B +-5 ------RC----NANCAAVT----RG L ! ! +1nwq_A +--7 +-1 RGQGNART--AGQT--FTRG------ L ! ! +1gd2_F ! ! ------NCRT--ATAT--STRG---- L ! +--1t2k_D ! ------------NT--ATAT--STRC L --8 +1jnm_A ! +-3 ------------NCRTATAT--STRG L ! +-4 +1dh3_A ! ! ! ------------NC--AAAT----RT L +---6 +1a02_F ! ------------NCTT--AT----RG L ! +2dgc_A +-2 ------------NT--ATAT--STRA L +2c9l_Y |
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updated Thu Sep 12 15:03:02 2024