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3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Tue Jul 29 15:44:42 2025

structure name	THE O. NOVA TELOMERE END BINDING PROTEIN COMPLEXED WITH SINGLE STRAND DNA
reference	Bevilacqua et al. 'Cell(Cambridge,Mass.)' 95 963 1998
source	STERKIELLA NOVA
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Nucleic acid-binding proteins;
reference complex	1otc_B 2i0q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1otc_A interface=24,26,27,29,30,36,41,71,76,78,92,94,99,187,189,201,203,204,222,224,225,236,238,239,255,256,257, eyvelakasltsaqpqhfyavviDaTFpYKtnqerYicslKivdptlylkqqkgagdasdyatlvlyakrFedlpIiHragdiirvhratlRlYngqrQfnanvfyssswalfstdkrsvtqeinnqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytalnkaqaqkgDfDvvakilqvhelDeYTnelklkdasgqvfytlsLkLKfphvrtgevvRiRSatydetstqkkvlilSHYsniitfiqssklakelrakiqddhsvevaslkknvslnavvltevdkkhaalpstslqdlfhhadsdkelqaqdtfrtqfyvtkiepsdvkewvkgydrktkkssslkgasgkgdnifqvqflvkdastqlnnntyrvllytqdglganffnvkadnlhknadarkkledsaelltkfnsyvdavverrngfylikdtkliy > 1otc_B interface=35,36,39,40,42,49,97,100,125,131,136, qqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqe