2i0q_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF A TELOMERE SINGLE-STRAND DNA-PROTEIN COMPLEX FROM O. NOVA WITH FULL-LENGTH ALPHA AND BETA TELOMERE PROTEINS (TELOMERE-BINDING PROTEIN BETA SUBUNIT)
reference	Horvath et al.
source	STERKIELLA NOVA
experiment	X-ray (resolution=1.91, R-factor=0.245)
structural superfamily	Nucleic acid-binding proteins;
sequence family	Telomerebinding protein beta subunit TEBP;
multimeric complexes	2i0q_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2i0q_B interface=36,37,40,41,43,50,98,101,126,132,137, qqqsafkqlytelfnnegdfskvssnlkkplkcyvKEsyPHfLvtdgyfFvapyftkeavnefhakfpnvnivdltdkvivinnwslelrrvnsaevFtsYanlearlivhsfkpnlqerlnptrYpvnlfRddefKttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvdagivkasaskgdefsdfsfkegntatlkiadifvqekg

  
  --KTEGPGHGLGFG------FGYG------YGRGKG   L     +-----------------------------1jb7_B    
                                             +-2 
  ----EGPGHGLGFG------FGYT------YTRTKT   L   ! +-----------------------------1ph6_B    
                                           --3 
  --KTEGPGHGLGFG------FGYG------YTRGKG   L   !       +---------------------2i0q_B    
                                             +-------1 
  QT------------RTLTTT----QTSTHT------               +---------------------4gnx_B

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updated Fri Sep 13 16:23:17 2024