1p47_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TANDEM ZIF268 MOLECULES COMPLEXED TO DNA (Early growth response protein 1)
reference	Peisach et al.
source	Mus musculus
experiment	X-ray (resolution=2.20, R-factor=0.219)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1p47_A interface=17,19,20,23,45,47,48,51,73,75,76,79, erpyacpvescdrrfsRsDEltRhirihtgqkpfqcricmrnfsRsDHltThirthtgekpfacdicgrkfaRsDErkRhtkihlrq
interface signature	RDERRDHTRDER

Estimated binding specificities ?

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# IC=11.794 IC/col=1.072 n_of_columns=11

specificity:

A |  11   0   0   0   8   0   0   0  11   0   0
C |   8   0  87   0   8   0   0   0  69   0   0
G |  69  96   0  96  11  96  96  96   8  96  96
T |   8   0   9   0  69   0   0   0   8   0   0

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updated Mon Dec 16 18:33:17 2024