1p7h_LN : 3D-footprint complex

structure name	STRUCTURE OF NFAT1 BOUND AS A DIMER TO THE HIV-1 LTR KB ELEMENT
reference	von Koenig et al. Nat.Struct.Biol. 10 800 2003
source	Homo sapiens
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;"Winged helix" DNA-binding domain;
reference complex	1p7h_L 3qrf_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1p7h_L interface=29,32,34,35,38,145,179,272,273, ssvplewplssqsgsyelrievqpkphhRahYeTEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQrsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingKRkrsqpqhftyhpv > 1p7h_N interface=29,32,34,35,38,145,179,272,273, ssvplewplssqsgsyelrievqpkphhRahYeTEgsRgavkaptgghpvvqlhgymenkplglqifigtaderilkphafyqvhritgktvtttsyekivgntkvleiplepknnmratidcagilklrnadielrkgetdigRkntrvrlvfrvhipessgrivslqtasnpiecsQrsahelpmverqdtdsclvyggqqmiltgqnftseskvvftekttdgqqiwemeatvdkdksqpnmlfveipeyrnkhirtpvkvnfyvingKRkrsqpqhftyhpv
interface signature	RYTERRQKR/RYTERRQKR

Estimated binding specificities ?

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# IC=8.796 IC/col=0.677 n_of_columns=13

specificity:

A |   7   0   0   0  16  24  24  24  24   0   0  96  75
C |  11  56  96  96  56  24  24  24  24   0   0   0   5
G |   5   0   0   0   8  24  24  24  24  96  96   0   5
T |  73  40   0   0  16  24  24  24  24   0   0   0  11

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updated Mon Sep 9 13:55:07 2024