1puf_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
reference	Laronde-Leblanc et al. 'Genes 17 2060 2003
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=1.90, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1puf_A interface=14,17,59,62,63,66, nnpaanwlharstRkkRcpytkhqtlelekeflfnmyltrdrryevarllnlterqvkIwfQNrrMkmkkinkdrak > 1puf_B interface=5,50,54,57,58, arrkRrnfnkqateilneyfyshlsnpypseeakeelakkcgitvsqvsNwfgNkrIRykknigkfqeeaniy
interface signature	RRIQNM/RNNIR

Estimated binding specificities ?

readout + contact

# IC=10.915 IC/col=0.910 n_of_columns=12

specificity:

A |  73   0   0  96  13  22   0  96   0  24  68   9
C |   6   0   0   0   4   6   0   0  96  24   9  77
G |  13   0  96   0   0   9   0   0   0  24   4   9
T |   4  96   0   0  79  59  96   0   0  24  15   1

scan!

home
updated Fri Dec 13 10:55:18 2024