1puf_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
reference	Laronde-Leblanc et al. 'Genes 17 2060 2003
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=1.90, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1puf_A 1puf_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1puf_A interface=14,17,59,62,63,66, nnpaanwlharstRkkRcpytkhqtlelekeflfnmyltrdrryevarllnlterqvkIwfQNrrMkmkkinkdrak > 1puf_B interface=5,50,54,57,58, arrkRrnfnkqateilneyfyshlsnpypseeakeelakkcgitvsqvsNwfgNkrIRykknigkfqeeaniy
interface signature	RRIQNM/RNNIR

Estimated binding specificities ?

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# IC=10.779 IC/col=0.898 n_of_columns=12

specificity:

A |   7  11  24   0   0  96  40  81   0   0  96   3
C |   3  30  24   0   0   0   3   0   0  96   0  11
G |  59   7  24  96   0   0   0   1   0   0   0   5
T |  27  48  24   0  96   0  53  14  96   0   0  77

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updated Tue Jul 29 16:30:43 2025