1puf_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HOXA9 AND PBX1 HOMEODOMAINS BOUND TO DNA
reference	Laronde-Leblanc et al. 'Genes 17 2060 2003
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=1.90, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1puf_A 1puf_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1puf_A interface=14,17,59,62,63,66, nnpaanwlharstRkkRcpytkhqtlelekeflfnmyltrdrryevarllnlterqvkIwfQNrrMkmkkinkdrak > 1puf_B interface=5,50,54,57,58, arrkRrnfnkqateilneyfyshlsnpypseeakeelakkcgitvsqvsNwfgNkrIRykknigkfqeeaniy
interface signature	RRIQNM/RNNIR

Estimated binding specificities ?

readout + contact

# IC=10.702 IC/col=0.892 n_of_columns=12

specificity:

A |  64   0   0  96  12  32   0  96   0  24  60  12
C |   8   0   0   0   4   4   0   0  96  24  12  72
G |  20   0  96   0   0   0   0   0   0  24   8   4
T |   4  96   0   0  80  60  96   0   0  24  16   8

scan!

home
updated Mon Sep 9 13:56:45 2024