interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE IMMUNOGLOBULIN KB DNA
referenceHuang et al.
sourceMUS MUSCULUS
experimentX-ray (resolution=2.90, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
reference complex1nfk_A 9bdw_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCER/RRYCEHK

Estimated binding specificities ?

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# IC=10.501 IC/col=0.955 n_of_columns=11 specificity:   
A |   0   0  96  57  24   0   1   0   0   0  67
C |   0   0   0   9  24   9   0  96  96  96  11
G |  96  96   0  11  24  86  19   0   0   0   9
T |   0   0   0  19  24   1  76   0   0   0   9
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updated Mon Sep 9 14:25:13 2024