1yrn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
reference	Johnson et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1le8_A 1le8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1yrn_A interface=39,40,43,44,47,48, ispqarafleqvfrrkqslnskekeevakkcgitplqvRVwfINkrMRs > 1yrn_B interface=5,8,51,54,55,58, tkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektitiapeladllsgepl
interface signature	RVINMR/RRNSNR

Estimated binding specificities ?

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# IC=13.335 IC/col=0.784 n_of_columns=17

specificity:

A |   0   0   6  96  79  66   3  24  24   6   3  24   1  24   0   0  89
C |   0   0   0   0   8   5   6  24  24   3   6  24  89  24   0  96   3
G |   0  96   1   0   6  19   3  24  24   5  11  24   6  24   0   0   0
T |  96   0  89   0   3   6  84  24  24  82  76  24   0  24  96   0   4

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updated Mon Sep 9 14:38:02 2024