1ytf_A : 3D-footprint complex

structure name	YEAST TFIIA/TBP/DNA COMPLEX (PROTEIN TATA BINDING PROTEIN TBP)
reference	Richmond et al. Nature 381 127 1996
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=0.235)
structural superfamily	TATA-box binding protein-like;
sequence family	Transcription factor TFIID or TATAbinding;
multimeric complexes	1nh2_AC 1ytf_AC 4v1n_ABMO 4v1o_ABMO 5fmf_1AMPQUV
reference complex	1ytb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ytf_A interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm
interface signature	NVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=10.404 IC/col=1.040 n_of_columns=10

specificity:

A |   8   0   8   0   0  72   0  96   0  96
C |   8   0   8   8   0   8   0   0   0   0
G |  72   0   8   8   0   8   0   0   0   0
T |   8  96  72  80  96   8  96   0  96   0

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updated Sat Aug 2 02:09:54 2025