interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE REPLICATION TERMINATION PROTEIN IN COMPLEX WITH A PSEUDOSYMMETRIC 21MER B-SITE DNA
(Replication termination protein)
referenceWilce et al. 'to ? ? ?
sourceBacillus subtilis
experimentX-ray (resolution=3.10, R-factor=0.206)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyReplication terminator protein;
multimeric complexes1f4k_AB 2dpd_AB 2efw_AB 2efw_FG
reference complex1f4k_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRLNHTYR

Estimated binding specificities ?

readout + contactlogo
# IC=5.105 IC/col=0.851 n_of_columns=6 specificity:   
A |   0   8  69  87  11  96
C |   0  11   8   1  69   0
G |   0  69   8   0   8   0
T |  96   8  11   8   8   0
scan!

home
updated Thu Sep 12 16:01:31 2024