2han_AB : 3D-footprint complex

structure name	STRUCTURAL BASIS OF HETERODIMERIC ECDYSTEROID RECEPTOR INTERACTION WITH NATURAL RESPONSE ELEMENT HSP27 GENE PROMOTER
reference	Kolodziejczyk et al. 'Nucleic 35 2705 2007
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=1.95, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	2han_A 2han_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2han_A interface=22,25,29,30,78, khlcsicgdrasgkhygvyscEgcKgffKRtvrkdltyacrenrnciidkrqrnrcqycryqkcltcgmkreavqeeR > 2han_B interface=25,28,32,33,57, rvqeelclvcgdrasgyhynaltcEgcKgffRRsvtksavycckfgracemdmymrRkcqecrlkkclavgmrpecvvpenqcamkr
interface signature	EKKRR/EKRRR

Estimated binding specificities ?

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# IC=9.433 IC/col=0.786 n_of_columns=12

specificity:

A |   5   0   0   0   0  80  24  10  24  10  74   0
C |  12   0   0   0  96   5  24  10  24  69  16  96
G |  69  96   0   0   0   6  24  12  24   7   6   0
T |  10   0  96  96   0   5  24  64  24  10   0   0

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updated Fri Dec 13 12:11:19 2024