| structure name | STRUCTURAL BASIS OF HETERODIMERIC ECDYSTEROID RECEPTOR INTERACTION WITH NATURAL RESPONSE ELEMENT HSP27 GENE PROMOTER (ECDYSONE RECEPTOR) |
| reference | Kolodziejczyk et al. 'Nucleic 35 2705 2007 |
| source | DROSOPHILA MELANOGASTER |
| experiment | X-ray (resolution=1.95, R-factor=0.182) |
| structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | Zinc finger, C4 type two domains; |
| multimeric complexes | 1r0n_AB 1r0o_AB 2han_AB |
| redundant complexes |  1r0o_B
1r0n
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: ECDYSTEROID RECEPTOR | ||
| AGGTCA | PubMed | 1r0n_AB(1.09e-04), 1r0o_AB(6.75e-05), 1r0o_B(1.24e-07), ... (total=4) |
| GGTTCAATGCACT | PubMed | 2han_B(8.75e-03), 1r0n_AB(1.01e-03), 1r0o_AB(5.41e-03), ... (total=4) |
Dendrogram of similar interfaces ?
matrix format--EA--KG--RTRTRT---- +2han_B +--1 --EA--KG--RTRTRT---- +--------------9 +4umm_E ! ! --EC--KA--RGRG------ L ! +--4nqa_I ! --EC--KG--RGRG----KA L ! +----2nll_B ! ! HGECAGKGAAKGRT------ L ! +-10 +1lo1_A ! ! ! +-2 --EC--KG--KGRG--RC-- L ! ! +--8 +2ff0_A -15 ! ! ------KGVT--RG------ L ! +-----12 +-5cbz_E ! ! ! --EA--KG--KTRG------ L ! ! ! +2han_A ! ! ! +-3 --EC--KG--KGRG------ ! ! +------5 +3dzy_A ! ! ! --DG--KG--RTRG------ L ! ! +3cbb_A +-14 ------KGVT--RG------ ! +-1r4i_A ! +---7 --ET--KGAT--RG------ L ! ! ! +1lat_A ! ! +-6 --EC--KG--RGRG------ L ! +------11 +3dzy_D ! ! ! --EC--KG--KGRG------ L ! ! ! +1ynw_B +-13 +-----4 --EC--KG--RGRG------ L ! +5uan_B ! --EC--KG--KTRG------ L +-------------2nll_A |
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updated Tue Dec 17 22:47:09 2024