2o61_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NFKB, IRF7, IRF3 BOUND TO THE INTERFERON-B ENHANCER
reference	'Cell(Cambridge,Mass.)' 129 1111 2007
source	HOMO SAPIENS
experiment	X-ray (resolution=2.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2o61_A interface=15,17,18,20,21,23,169,200,312,356,357,359,360,363,364,427,429,465,466,468,469,473, gyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgfyeaelcpdrcihsfqnlgiqcvkkrdleqaisqriqtnnnpfqvpieeqrgdydlnavrlcfqvtvrdpsgrplrlppvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdKvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdaaprvlfgewllgeissgcyeglqwldeartcfrvpwkHfarkdlseadarifkawavargrwppssrpppeaetaeragwkTNfRCalRStrrfvmlrdnsgdpadqhkvyalsgslssdslpwlvsqldlgqlegvawvnksrtrfripwkHgLrqdaqqedfgifqawaeatgayvpgrdkpdlptwkRNfRSalnRkeglrlaedrskdphdphkiyefvn > 2o61_B interface=18,20,21,23,24,28, mdgpylqileqpkqrgfRfRYvCEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgictvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhpdlaylqaegggdrqlgdrekelirqaalqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydskapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdinitkpasvfvqlrrksdletsepkpflyype
interface signature	RRYCERRKHTNRCRSHLRNRSR/RRYCEH

Estimated binding specificities ?

readout + contact

# IC=25.383 IC/col=0.875 n_of_columns=29

specificity:

A |   3  96   0   0  96  88  24   3   0   0   0   0  86   7  24   0   1  91  90  24  24   9   0   4   5   0  24  24   1
C |   6   0   0   0   0   6  24   1   0  96  96  96   4  69  24   0   4   3   4  24  24   9  96   1  83  96  24  24   1
G |  82   0  96  96   0   1  24   6   0   0   0   0   3  13  24   0   1   1   1  24  24  13   0   1   5   0  24  24  89
T |   5   0   0   0   0   1  24  86  96   0   0   0   3   7  24  96  90   1   1  24  24  65   0  90   3   0  24  24   5

scan!

home
updated Fri Dec 13 12:47:45 2024