2pjr_A : 3D-footprint complex

structure name	HELICASE PRODUCT COMPLEX (PROTEIN HELICASE PCRA)
reference	Dillingham et al. 'Cell(Cambridge,Mass.)' 97 75 1999
source	GEOBACILLUS STEAROTHERMOPHILUS
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	?;P-loop containing nucleoside triphosphate hydrolases;
sequence family	UvrD/REP helicase;
multimeric complexes	2pjr_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2pjr_A interface=58,59,87,186,221,251,253,254,353,379,381, qllahlnkeqqeavrttegpllimagagsgktrvlthriaylmaekhvapwnilaitFTnkaaremrervqsllggaaedvwistfHsmcvrilrrdidriginrnfsildptdqlsvmktilkeknidpkkfeprtilgtisaaknellppeqfakrastyyekvvsdvyqeyqqrllrnhsldFddlimttiqlfdrvpdvlhyyqykfqyihideyqDtnraqytlvkklaerfqnicavgdadqsiYrWRgadiqnilsferdypnakvilleqnyrstkrilqaaneviehnvnrkpkriwtenpegkpilyyeamneadeaqfvagrireavergerryrdfavlyRtnaqsrvmeemllkanipyqivgglKfYdrkeikdilaylrvianpdddlsllriinvpkrgigastidklvryaadhelslfealgelemiglgakaagalaafrsqleqwtqlqeyvsvtelveevldksgyremlkaertieaqsrlenldeflsvtkhfenvsddksliafltdlalisdldeld
interface signature	FTHFDYWRRKY

Estimated binding specificities ?

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# IC=5.938 IC/col=1.188 n_of_columns=5

specificity:

A |   7   0   0   0   0
C |   7   0   0   0   0
G |   7   0   0   0   0
T |  75  96  96  96  96

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Dendrogram of similar interfaces ?

matrix format

  
  FTTT--HT----------------FTDTYTWTRTRT----KTYT--   L                       +2pjr_A    
                                                                         +-1 
  ------HT----------------FT----WTRTRT----------       +-----------------2 +3pjr_A    
                                                       !                 ! 
  FT----HT------------DT--FT----FTRTRT--AC------       !                 +4c2t_B    
                                                       ! 
  ------HT----------------FT----FTRTRTNTAT----RG     --6                +-4c2u_D    
                                                       !        +-------3 
  FT----HT------------ST--FT----WGRTRT----------       !      +-4       +-2is6_B    
                                                       !      ! ! 
  ------HTDTKTRTATFTLTDTQTFT----WTRTRT----------   L   +------5 +---------1uaa_B    
                                                              ! 
  FG--RTHG----------LT----FT----WTRGRT----------   L          +-----------6ppr_B

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updated Fri Sep 13 16:36:13 2024