2vbj_AB : 3D-footprint complex

structure name	MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS
reference	Cabaniols et al. Nature 456 107 2008
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=1.95, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B 2vbo_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vbj_A interface=21,23,25,27,29,31,32,37,39,43,45,67,69,71,72,74,138,139, ntkynkefllylagfvdgdgSiIaQiEpNqSYkfkhRlKltfKvTqktqrrwfldklvdeigvgyvRdEgSVsNyilseikplrnfltqlqpflklkqkqanlvlkiteqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 2vbj_B interface=21,23,25,29,31,32,37,39,43,45,65,67,69,71,72,74,138,139, ntkynkefllylagfvdadgSiIaQiepNqSSkfkhRlKltfQvTqktqrrwfldklvdeigvgYvRdSgSVsNyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	SIQENSYRKKTRESVNKT/SIQNSSRKQTYRSSVNKT

Estimated binding specificities ?

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# IC=23.089 IC/col=1.004 n_of_columns=23

specificity:

A |   2   0   0  25   0   0   0   0   2   9  24  24  61  84   0   0  96   0   0   0   0  96  91
C |   6   3   0  66  96   0   3   0   8   6  24  24  11   2   0   0   0   0  96  96   0   0   2
G |   2   0  96   2   0   0   0   0  16  16  24  24  11   8  96  96   0   2   0   0   0   0   1
T |  86  93   0   3   0  96  93  96  70  65  24  24  13   2   0   0   0  94   0   0  96   0   2

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updated Tue Jul 29 18:44:03 2025