2vbj_AB : 3D-footprint complex

structure name	MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS
reference	Cabaniols et al. Nature 456 107 2008
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=1.95, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2vbo_A 2vbo_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vbj_A interface=21,23,25,27,29,31,32,37,39,43,45,67,69,71,72,74,138,139, ntkynkefllylagfvdgdgSiIaQiEpNqSYkfkhRlKltfKvTqktqrrwfldklvdeigvgyvRdEgSVsNyilseikplrnfltqlqpflklkqkqanlvlkiteqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 2vbj_B interface=21,23,25,29,31,32,37,39,43,45,65,67,69,71,72,74,138,139, ntkynkefllylagfvdadgSiIaQiepNqSSkfkhRlKltfQvTqktqrrwfldklvdeigvgYvRdSgSVsNyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	SIQENSYRKKTRESVNKT/SIQNSSRKQTYRSSVNKT

Estimated binding specificities ?

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# IC=23.411 IC/col=1.018 n_of_columns=23

specificity:

A |   3   0   0  15   0   0   0   0   3   9  24  24  61  93   0   0  96   0   0   0   0  96  89
C |   7   4   0  75  96   0   3   0   6   9  24  24  11   0   0   0   0   0  96  96   0   0   4
G |   3   0  96   3   0   0   1   0  10   9  24  24  12   3  96  96   0   3   0   0   0   0   3
T |  83  92   0   3   0  96  92  96  77  69  24  24  12   0   0   0   0  93   0   0  96   0   0

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updated Mon Jan 5 01:48:19 2026