2vbj_AB : 3D-footprint complex

structure name	MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS
reference	Cabaniols et al. Nature 456 107 2008
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=1.95, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B 2vbo_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vbj_A interface=21,23,25,27,29,31,32,37,39,43,45,67,69,71,72,74,138,139, ntkynkefllylagfvdgdgSiIaQiEpNqSYkfkhRlKltfKvTqktqrrwfldklvdeigvgyvRdEgSVsNyilseikplrnfltqlqpflklkqkqanlvlkiteqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 2vbj_B interface=21,23,25,29,31,32,37,39,43,45,65,67,69,71,72,74,138,139, ntkynkefllylagfvdadgSiIaQiepNqSSkfkhRlKltfQvTqktqrrwfldklvdeigvgYvRdSgSVsNyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	SIQENSYRKKTRESVNKT/SIQNSSRKQTYRSSVNKT

Estimated binding specificities ?

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# IC=23.241 IC/col=1.010 n_of_columns=23

specificity:

A |   2   0  96   0   0  93   0   0   0   0  14  24  24  67  77  96  91  96   0   4   0  92  80
C |   2   0   0   0   0   3   0  96  96   4  10  24  24   7  10   0   0   0   0   2  96   0   2
G |   4   0   0  96  96   0   0   0   0   2   5  24  24  10   7   0   5   0  96  75   0   2  10
T |  88  96   0   0   0   0  96   0   0  90  67  24  24  12   2   0   0   0   0  15   0   2   4

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updated Wed Jun 24 13:47:01 2026