2vbo_AB : 3D-footprint complex

structure name	MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS
reference	Cabaniols et al. Nature 456 107 2008
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=1.80, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B 2vbo_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vbo_A interface=22,24,26,28,32,38,44,46,66,68,70,72,73,75,77,139,140, mntkynkefllylagfvdgdgSiIaQiKpnqSskfkhRlsltfQvTqktqrrwfldklvdeigvgYvRdSgSVsNyIlseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 2vbo_B interface=21,23,25,27,31,32,37,39,43,45,67,72,74,138,139, ntkynkefllylagfvdgdgSiIaQiEpnqSYkfkhRlKltfKvTqktqrrwfldklvdeigvgyvSdsgsVsNyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld
interface signature	SIQKSRQTYRSSVNIKT/SIQESYRKKTSVNKT

Estimated binding specificities ?

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# IC=20.345 IC/col=0.969 n_of_columns=21

specificity:

A |   0   0  17   0   0   0   0   1  10  24  24  56  80   3   3  96   0   0   0   0  96
C |   0   0  56  96   0   0   0   4  10  24  24  10   6   0   2   0   0  96  96   0   0
G |   0  96  13   0   0   0   0   0  17  24  24  13   6  93  41   0   0   0   0   0   0
T |  96   0  10   0  96  96  96  91  59  24  24  17   4   0  50   0  96   0   0  96   0

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updated Tue Jul 29 18:44:19 2025