3a01_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA
reference	Miyazono et al. 'Embo 29 1613 2010
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	3a01_E 3lnq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3a01_A interface=6,11,16,20,61,62,65,66, arrigHpyqnRtppkRkkpRtsftriqvaelekrfhkqkylasaeraalarglkmtdaqvKTwfQNrrtkwrrqtaee > 3a01_B interface=2,4,45,46,49,50, rRyRttftsfqleelekafsrthypdvftreelamkiglteariQVwfQNrrakwrk
interface signature	HRRRKTQN/RRQVQN

Estimated binding specificities ?

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# IC=10.812 IC/col=0.983 n_of_columns=11

specificity:

A |   5  11  96  96   5   5  96  96   0   0   0
C |   6  10   0   0  10   5   0   0   6   5   0
G |  10  10   0   0  10   5   0   0   5   6  96
T |  75  65   0   0  71  81   0   0  85  85   0

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updated Mon Sep 9 16:15:12 2024