3a01_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA
reference	Miyazono et al. 'Embo 29 1613 2010
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	3a01_E 3lnq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3a01_E interface=1,6,10,52,55,56, HpyqnRtppRtsftriqvaelekrfhkqkylasaeraalarglkmtdaqvkTwfQNrrtkwrrqtaee > 3a01_F interface=2,4,45,46,49,50, rRyRttftsfqleelekafsrthypdvftreelamkiglteariQVwfQNrrakwrkqekv
interface signature	HRRTQN/RRQVQN

Estimated binding specificities ?

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# IC=11.075 IC/col=1.007 n_of_columns=11

specificity:

A |   6  12  96  96   6   0  78  96   0   0   0
C |  12  12   0   0  12   6   6   0   0   0   0
G |   6  12   0   0  12   0   6   0   0   0  96
T |  72  60   0   0  66  90   6   0  96  96   0

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updated Mon Jan 5 02:03:23 2026