3a01_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA
reference	Miyazono et al. 'Embo 29 1613 2010
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	3a01_E 3lnq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3a01_E interface=1,6,10,52,55,56, HpyqnRtppRtsftriqvaelekrfhkqkylasaeraalarglkmtdaqvkTwfQNrrtkwrrqtaee > 3a01_F interface=2,4,45,46,49,50, rRyRttftsfqleelekafsrthypdvftreelamkiglteariQVwfQNrrakwrkqekv
interface signature	HRRTQN/RRQVQN

Estimated binding specificities ?

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# IC=11.451 IC/col=1.041 n_of_columns=11

specificity:

A |   0  96  96   0   6  90  66   0   0  72  78
C |  96   0   0   0   6   0   6   0   0   6   6
G |   0   0   0   0   6   6  12   0   0  12   6
T |   0   0   0  96  78   0  12  96  96   6   6

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updated Tue Jul 29 18:57:15 2025