3a01_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARISTALESS AND CLAWLESS HOMEODOMAINS BOUND TO DNA
reference	Miyazono et al. 'Embo 29 1613 2010
source	DROSOPHILA MELANOGASTER
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	3a01_E 3lnq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3a01_E interface=1,6,10,52,55,56, HpyqnRtppRtsftriqvaelekrfhkqkylasaeraalarglkmtdaqvkTwfQNrrtkwrrqtaee > 3a01_F interface=2,4,45,46,49,50, rRyRttftsfqleelekafsrthypdvftreelamkiglteariQVwfQNrrakwrkqekv
interface signature	HRRTQN/RRQVQN

Estimated binding specificities ?

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# IC=11.283 IC/col=1.026 n_of_columns=11

specificity:

A |   5  11  96  96   8   0  79  96   0   0   0
C |  11  11   0   0  16   0   7   0   0   0   0
G |   5  11   0   0  16   0   5   0   0   0  96
T |  75  63   0   0  56  96   5   0  96  96   0

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updated Wed Jun 24 14:01:18 2026