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structure nameOPPOSITE GATA DNA BINDING
(Trans-acting T-cell-specific transcription factor GATA-3)
referenceBates et al. J.Mol.Biol. 381 1292 2008
sourceMus musculus
experimentX-ray (resolution=2.70, R-factor=?)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyGATA zinc finger;
multimeric complexes3dfv_CD 3dfx_AB
redundant complexes3dfv_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTLRNLLR

Estimated binding specificities ?

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# IC=4.424 IC/col=0.737 n_of_columns=6 specificity:   
A |   6   6  96   1   9  16
C |   6   6   0   1  67  19
G |   6   6   0   1   9  16
T |  78  78   0  93  11  45
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Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: GATA
AGATAPubMed3dfx_B(1.00e-03), 3dfx_AB(1.70e-05)
AGATAAPubMed3dfx_B(6.27e-06), 3dfx_AB(1.11e-07), 3dfv_C(1.55e-03)
AGATAGPubMed3dfx_B(3.37e-03), 3dfx_AB(2.04e-04)
CGATAPubMed3dfx_B(1.00e-03), 3dfx_AB(8.54e-03)
CGATAGPubMed3dfx_B(3.37e-03)
CGATAGAGAGATAAPubMed3dfx_B(2.53e-03), 3dfx_AB(5.24e-06)
GACAAGATAAPubMed3dfx_B(6.67e-04), 3dfx_AB(1.43e-03)
GATAAPubMed3dfx_B(7.05e-07), 3dfv_CD(7.11e-03), 3dfx_AB(1.70e-05), ... (total=4)
GATAAGPubMed3dfx_B(6.27e-06), 3dfv_CD(3.17e-04), 3dfx_AB(2.04e-04), ... (total=4)
GATAGPubMed3dfx_B(1.00e-03), 3dfx_AB(8.54e-03)
TATAAAPubMed3dfx_B(6.84e-05), 3dfv_CD(3.17e-04), 3dfv_C(1.42e-06)
TGATAAPubMed3dfx_B(8.38e-10), 3dfv_CD(1.61e-04), 3dfx_AB(2.04e-04), ... (total=4)
TGATAGPubMed3dfx_B(6.27e-06), 3dfv_C(1.12e-03)
TTATCTPubMed3dfx_B(6.27e-06), 3dfx_AB(1.11e-07), 3dfv_C(1.55e-03)
sitesourcematches (E-value)

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updated Sun Aug 3 06:48:18 2025