interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
referenceStroud et al. J.Mol.Biol. 393 98 2009
sourceHOMO SAPIENS
experimentX-ray (resolution=3.59, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
reference complex1nfk_A 9bdw_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCER/RRYEK/RRYCEHK

Estimated binding specificities ?

readout + contactlogo
# IC=13.871 IC/col=0.771 n_of_columns=18 specificity:   
A |   0   5   0   0   0  24  24  24  24   5   0  79  67  24   5   0   0   0
C |   0   5  96  96  96  24  24  24  24   5   0   5  11  24   5   0  96  96
G |  96   7   0   0   0  24  24  24  24  75  96   5  13  24  79   0   0   0
T |   0  79   0   0   0  24  24  24  24  11   0   7   5  24   7  96   0   0
scan!

home
updated Mon Sep 9 17:51:44 2024