3gut_ABD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
reference	Stroud et al. J.Mol.Biol. 393 98 2009
source	HOMO SAPIENS
experiment	X-ray (resolution=3.59, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	1nfk_A 9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3gut_A interface=15,17,18,20,21,169, ayveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 3gut_B interface=16,18,19,22,203, gpylqileqpkqrgfRfRYvcEgpshgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype > 3gut_D interface=16,18,19,21,22,26,203, gpylqileqpkqrgfRfRYvCEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RRYCER/RRYEK/RRYCEHK

Estimated binding specificities ?

readout + contact

# IC=13.935 IC/col=0.774 n_of_columns=18

specificity:

A |   0   0  96   6  24   6   6   0   6  24  24  24  24   0   0   0  84   0
C |   0   0   0  72  24   6   6  96  78  24  24  24  24   0   0   0   6  96
G |  90  96   0   6  24   6   6   0   6  24  24  24  24  96  96  96   6   0
T |   6   0   0  12  24  78  78   0   6  24  24  24  24   0   0   0   0   0

scan!

home
updated Wed Jun 24 15:55:54 2026