3gut_CF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
reference	Stroud et al. J.Mol.Biol. 393 98 2009
source	HOMO SAPIENS
experiment	X-ray (resolution=3.59, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	1nfk_A 9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3gut_C interface=15,17,18,20,21,169, ayveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 3gut_F interface=16,18,19,22,26,203, gpylqileqpkqrgfRfRYvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RRYCER/RRYEHK

Estimated binding specificities ?

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# IC=9.998 IC/col=0.909 n_of_columns=11

specificity:

A |   9   1   0   0  89  24   6   0   0  75  82
C |   6  13  96  96   7  24   9   0   0   6   8
G |  75   0   0   0   0  24   6  96  96   6   0
T |   6  82   0   0   0  24  75   0   0   9   6

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updated Mon Jan 5 04:03:29 2026