3gut_CF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A HIGHER-ORDER COMPLEX OF P50:RELA BOUND TO THE HIV-1 LTR
reference	Stroud et al. J.Mol.Biol. 393 98 2009
source	HOMO SAPIENS
experiment	X-ray (resolution=3.59, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	1nfk_A 9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3gut_C interface=15,17,18,20,21,169, ayveiieqpkqrgmRfRYkCEgrsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 3gut_F interface=16,18,19,22,26,203, gpylqileqpkqrgfRfRYvcEgpsHgglpgasseknkksypqvkicnyvgpakvivqlvtngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmteacirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftaflpdstgsftrrlepvvsdaiydsKapnasnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyype
interface signature	RRYCER/RRYEHK

Estimated binding specificities ?

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# IC=10.161 IC/col=0.924 n_of_columns=11

specificity:

A |   7   6   0   0  76  24   6   0   0  90   6
C |   0   6  96  96   6  24   6   0   0   0  78
G |   0   8   0   0   8  24   6  96  96   6   6
T |  89  76   0   0   6  24  78   0   0   0   6

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updated Mon Sep 9 17:50:59 2024