Estimated binding specificities ?

structure nameCRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE COMPLEXED WITH DNA GUIDE STRAND AND 19-NT RNA TARGET STRAND WITH TWO MG2+ AT THE CLEAVAGE SITE
(ARGONAUTE)
referencePatel et al. Nature 461 754 2009
sourceTHERMUS THERMOPHILUS
experimentX-ray (resolution=3.21, R-factor=0.229)
structural superfamilyRibonuclease H-like;
sequence familyPiwi domain 589;
multimeric complexes3hk2_AB 3hvr_AB
reference complex4n41_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
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# IC=3.113 IC/col=0.195 n_of_columns=16 specificity:   
A |   0   0  24  24  24  24  24  24  24  24  24  24  16  24  24  12
C |   0   0  24  24  24  24  24  24  24  24  24  24  16  24  24  12
G |   0  96  24  24  24  24  24  24  24  24  24  24  16  24  24  12
T |  96   0  24  24  24  24  24  24  24  24  24  24  48  24  24  60
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updated Thu Jan 8 21:44:57 2026