interface graph thumbnail
legend  pdf

structure nameTERNARY COMPLEX OF DNA POLYMERASE DELTA
(DNA polymerase delta catalytic subunit)
referenceAggarwal et al. Nat.Struct.Mol.Biol. 16 979 2009
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=2.00, R-factor=0.195)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B; DNA polymerase family B, exonuclease do;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKQKRRNQ

Estimated binding specificities ?

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# IC=3.968 IC/col=0.661 n_of_columns=6 specificity:   
A |   9  24   0  11   0  67
C |  67  24  96  67   0   9
G |   9  24   0   9   0  11
T |  11  24   0   9  96   9
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Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 07:24:54 2023