3iay_A : 3D-footprint complex

structure name	TERNARY COMPLEX OF DNA POLYMERASE DELTA (DNA polymerase delta catalytic subunit)
reference	Aggarwal et al. Nat.Struct.Mol.Biol. 16 979 2009
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.00, R-factor=0.195)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family B; DNA polymerase family B, exonuclease do;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3iay_A interface=350,486,714,715,739,799,801, ssferkklptdfdpslydisfqqidaeqsvlngikdentstvvrffgvtseghsvlcnvtgfknylyvpapnssdandqeqinkfvhylnetfdhaidsievvskqsiwgysgdtklpfwkiyvtyphmvnklrtaferghlsfnswfsngtttydniaytlrlmvdcgivgmswitlpkgkysmiepnnrvsscqlevsinyrnliahpaegdwshtaplrimsfdiecagrigvfpepeydpviqianvvsiagakkpfirnvftlntcspitgsmifshateeemlsnwrnfiikvdpdviigynttnfdipyllnrakalkvndfpyfgrlktvkqeikesvfssKaygtretknvnidgrlqldllqfiqreyklrsytlnavsahflgeqsiisdlqngdsetrrrlavyclkdaylplrlmeklmalvnytemarvtgvpfsyllargqqikvvsqlfrkcleidtvipnmqsqasddQyegatviepirgyydvpiatldfnslypsimmahnlcyttlcnkatverlnlkidedyvitpngdyfvttkrrrgilpiildelisarkrakkdlrdekdpfkrdvlngrqlalkisansvygftgatvgklpclaisssvtaygrtmilktktavqekycikngykhdavvvygdtdsvmvkfgttdlkeamdlgteaakyvstlfkhpinlefekayfpyllinkKRyaglfwtnpdkfdkldqkglasvRrdscslvsivmnkvlkkiliernvdgalafvretindilhnrvdiskliisktlapnytNpQphavlaermkrregvgpnvgdrvdyviiggndklynraedplfvlenniqvdsryyltnqlqnpiisivapiigdkqangmfvv
interface signature	KQKRRNQ

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# IC=3.968 IC/col=0.661 n_of_columns=6

A |   9  24   0  11   0  67
C |  67  24  96  67   0  11
G |   9  24   0   9   0   9
T |  11  24   0   9  96   9

matrix format

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updated Fri Sep 13 17:06:48 2024